SE0830002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11631
  • Thellungiella salsuginea
  • SE0830002
  • hAT
  • Hat1
  • Scaffold_13213:18027-18332
  • ATTCAAAC
  • CAGAGCCGTGCCTGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCAAAC     C          -       - AA  AAGCATGTGCTTCAGGGCCGAAGAAGTTAAATATTTTTTTAGGGCCAATTTTCTAGAGTTTGAGTTAGTCCAAATAGTTTGTGAATAGGTAAAAGCATGTTTGGTTAGAGGTTTGAC
        CAGAG CGTGCCTGAG CACAGAC T  TG                                                                                                                     
        ||||| |||||||||| ||||||| |  ||                                                                                                                      
        GTCTC GCACGGACTC AAAGAGA T  GA                                                                                                                     
CAAACTTA     A          T       T --  TGTTCGCTCTTCTTTTTTAACCGGGGAATTTTGAAAAGAATTACGTCAAATCGGGTGTTTATTAACCGTTTTTCTTCTTCTTTTACTGTTTATACGCGAACCTTTCTTAGCTTGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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