SE0850003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11632
  • Thellungiella salsuginea
  • SE0850003
  • PIF/harbinger
  • To2
  • Scaffold_2008:6696-7003
  • TTA
  • AGGCTTTGAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             TGTACAAATCATATAAT    -  CAT -   A CAGATCAAAAAAATATTAATAAAAAAATAAATAAACTCTGCATGCAATACTGGGTGAACAGCTACTATTTTACAGCAGTTCTGGAAAAATTTATTTTTTTTTGATTTTTAGAGT
  AGGCTTTGAATGG                 GCAG AT   T TTA G                                                                                                                  
  |||||||||||||                 |||| ||   | ||| |                                                                                                                  A
  TCCGAAACTTACC                 GTCT AT   T ACG T                                                                                                                  
AT             -------------TATC    T  --- T   - CTTTTTTACGTCAATTAGACATATATTTTACTAGGAGAAAAAATAGTAAGTGTTTAAAATATGTCTTGTTTTATATAATTATATTTTAATTATCTAGACGTACGTCTAGAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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