SE0850005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11634
  • Thellungiella salsuginea
  • SE0850005
  • PIF/harbinger
  • To3
  • Scaffold_379:10172-10433
  • TAA
  • AGACCATGTCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C         ----------------CA     -  CCTAAGAGAGAGGTTCACCAGAATATAATAATACTTTTTTGTTTTTTTTCTTTTTTTTTAATTCAAAAATTATTTTTTAAAACCAATCAGGATGCTCC
  AGA CATGTCCAT                  GTGAA CC                                                                                                  
  ||| |||||||||                  ||||| ||                                                                                                  A
  TCT GTACAGGTA                  GTACT TG                                                                                                  
AA   C         ATCCCCGAGAAATCCCAA     G  TTCAAAATTCTGCTTTATGTTATTTTTTATTCTTTTTTCCATCTTCAAGTACCAGGTCCAAGAAAGGCTGCTTGTACTTTTCTGTCAGAGAAGTGTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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