SE0850007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11636
  • Thellungiella salsuginea
  • SE0850007
  • PIF/harbinger
  • To5
  • Scaffold_6223:20685-21105
  • TTA
  • AGGGGGTGTTATTTAATCATGAATTTAAAATGAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                     -AA     AAT      TCTATGTT         T   -G      ----      ATATCAGTTTGATGGATTCATTTGTTTAGATTCTAAAATCTCTGCAATATACACTGGATTTTGATTCTAATAATTTACTCATAAAACTCTATTAGAATTGATTTGAAATGACTTAATGTACAAAGATTTTAAAAA
  AGGGGGTGTTATTTAATCATG   TTTAA   GAATTT        TTATAATCT CTA  ATTTAA    AAATTG                                                                                                                                       
  |||||||||||||||||||||   |||||   ||||||        ||||||||| |||  ||||||    ||||||                                                                                                                                        
  TCCCCCACAATAAGTTAGTAC   AAATT   CTTAAA        GGTATTAGG GAT  TAAGTT    ACTAAG                                                                                                                                       
AT                     CAA     -AT      TTTAGGTT         T   AA      GATT      ATTTATTACAAAATTTTAGTTCACAATAACCAAGAAAACTAACATTTAGTATAAATTCTTCAAAATTTCAAACCACAATAAGTTATTTCTAAAGTTTAGAAAGTAATTTTAGGTCACAATAAGTTTTGATTTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End