SE0830009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11638
  • Thellungiella salsuginea
  • SE0830009
  • hAT
  • Hat2
  • Scaffold_13016:16429-16602
  • CTCCAAAA
  • CAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCCAAAA              --------GAA      TTCCTTGGGGGCAAATAAGAGTATATATAATTTTAGAAGTGGGGGCATTGAT
        CAGTGGCGGAGCCA           ACTTTT                                                    
        ||||||||||||||           ||||||                                                     
        GTCACCGCCTCGGT           TACCCC                                                    
AAAACCTC              GAAACAGATTG      AGTAAGCGGGGGTAACTAAAATTTTAAAACCACATCAAATAATTTCGGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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