Plant MITE

SE0850012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11641
Thellungiella salsuginea
SE0850012
PIF/harbinger
To6
Scaffold_27200:58-300
TAA
AGACCATCTCCAACCATGGG

Secondary structure and sequence

TSD TIR

5'

3'

TA            ACC     ----------TTA    A   AGTGTAAGAGTTCTCAAAACAATAATATAAAATGAAATCATGTACAAAATGAAGAGAAGAGTCTTTAAATGCATAAAAAGAGGTT
  AGACCATCTCCA   ATGGG             TTGA AAC                                                                                     
  ||||||||||||   |||||             |||| |||                                                                                      
  TCTGGTGGAGGT   TACCC             TTCG GAA                                                                                     
AA            ---     TCCTAAAATCTTC    A   GTATAATATACATATCTTTTATTATCAATTTATAATATTTCCGAAAATTTTATCCTCTCTCCCATAGGTTTTAGAGAACAAAGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0850012

TAAGACCATCTCCAACCATGGGTTATTGAAAACAGTGTAAGAGTTCTCAAAACAATAATATAAAATGAAATCATGTACAAAATGAAGAGAAGAGTCTTTAAATGCATAAAAAGAGGTTCTGAAACAAGAGATTTTGGATACCCTCTCTCCTATTTTAAAAGCCTTTATAATATTTAACTATTATTTTCTATACATATAATATGAAGAGCTTCTTCTAAAATCCTCCCATTGGAGGTGGTCTAA

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