SE0850014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11643
  • Thellungiella salsuginea
  • SE0850014
  • PIF/harbinger
  • To7
  • Scaffold_16567:29078-29327
  • TAA
  • AGGCTCTGATTGGTAACCTGCGGAATGGCGGAATTGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C           -C                    TTTTTAAACACAATTCCACA         CC  T   ------   AAA  C   TAATGAAAAAATACACACAAAAACGCAGACTGTGTTGTTGCTTA
  AGGCT TGATTGGTAAC  TGCGGAATGGCGGAATTGCG                    TGTTTTTTG  AA CAA      CAA   TC GCG                                            
  ||||| |||||||||||  ||||||||||||||||||||                    |||||||||  || |||      |||   || |||                                            A
  TCCGA ACTAACCATTG  ACGCCTTACCGCCTTAACGC                    CTTTTTTAG  CG CTT      TTC   GC TGA                                            
AA     A           AA                    --------------------         AA  C   ATCTAA   ---  -   ATATTCAGCGAAAAGACGCCTTACTGAAAAAGAAACATAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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