Plant MITE

SE0830016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11645
Thellungiella salsuginea
SE0830016
hAT
Hat3
Scaffold_8498:181681-182005
TAAGCGGA
GCGGACAGTGCCGTGTTTAGAATA

Secondary structure and sequence

TSD TIR

5'

3'

TAA  GG    T          --     ---------  AGAGACCTAAGACAAATAACAAGAAAAAATTTCCATTTTGCTCTAATTATTTCTAAAAAATATAAATTGTAAATCAGATTTAAATATTATTTTATAAGATGCTTTTTATTAATTTATAATAAATTTTC
   GC  ACAG GCCGTGTTTA  GAATA         TT                                                                                                                                
   ||  |||| ||||||||||  |||||         ||                                                                                                                                 
   CG  TGTC CGGCACGAAT  CTTGT         CG                                                                                                                                
AGG  AA    T          TA     TTTTTATTC  TAAACGAAATCCGGGGAAATTATAATTCGTTCAAAATCCGGAGATTAAAATATAAAAATAAATCATATAACCAACCACAGGTTTTTTTTTCTTTTAATCATATAATCAATTATATATAAAAACACCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0830016

TAAGCGGACAGTGCCGTGTTTAGAATATTAGAGACCTAAGACAAATAACAAGAAAAAATTTCCATTTTGCTCTAATTATTTCTAAAAAATATAAATTGTAAATCAGATTTAAATATTATTTTATAAGATGCTTTTTATTAATTTATAATAAATTTTCAACCACAAAAATATATATTAACTAATATACTAATTTTCTTTTTTTTTGGACACCAACCAATATACTAAATAAAAATATAAAATTAGAGGCCTAAAACTTGCTTAATATTAAAGGGGCCTAAAGCAAATGCCTTATTTTTTGTTCATTAAGCACGGCTCTGTAAGCGGA

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