Plant MITE

SE0850017

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11646
Thellungiella salsuginea
SE0850017
PIF/harbinger
To9
Scaffold_8446:20536-20787
TAA
AGAGCATCTCCATTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA                ---    -     CCTAAATTTTG -    AAAACCTAGGTATTTCCTATCTTTTTTTATAGATCGCTCCTTATATAAGAGACTAAGAGACTGTCTTTTACACTAGATAGAGAGGG
  AGAGCATCTCCATTAG   AGTC TCTTA           G CCTA                                                                                      
  ||||||||||||||||   |||| |||||           | ||||                                                                                       
  TCTCGTAGAGGTAGTC   ATAA TTGAT           A ACAG                                                                                      
AA                ACA    G     ----------- C    AGAATTGTTATCAAATTATAAAAAAAATCCTCTCTCTTTTTTTTTAATTTTGTAATTTAATTTTTATATAAAAGTTGATTAGTATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0850017

TAAGAGCATCTCCATTAGAGTCTCTTACCTAAATTTTGGCCTAAAAACCTAGGTATTTCCTATCTTTTTTTATAGATCGCTCCTTATATAAGAGACTAAGAGACTGTCTTTTACACTAGATAGAGAGGGCTATGATTAGTTGAAAATATATTTTTAATTTAATGTTTTAATTTTTTTTTCTCTCTCCTAAAAAAAATATTAAACTATTGTTAAGAGACACATAGTTGAATAACACTGATGGAGATGCTCTAA

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