SE0850018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11647
  • Thellungiella salsuginea
  • SE0850018
  • PIF/harbinger
  • To10
  • Scaffold_18558:13658-13966
  • TAA
  • AGAGCACGTTCAATGGGGACGCTTAAAATGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA      C        -G   CG   A       -TTATG     --T     AAAAAAA       G    TA     TT   ---     -  TC   --   TGTTCTAGCGTTTTAAGATGCGATGCTTGTGGACAAGTGTCAAATAATTAGAAGATCAT
  AGAGCA GTTCAATG  GGA  CTT AAATGGA      AGGCA   TTTAA       AATAAAT TAAA  ATTAA  GAA   GTGAG AA  GAC  GCT                                                           
  |||||| ||||||||  |||  ||| |||||||      |||||   |||||       ||||||| ||||  |||||  |||   ||||| ||  |||  |||                                                            
  TCTCGT CAAGTTAC  TCT  GAA TTTACCT      TTTGT   AAATT       TTATTTA ATTT  TAATT  CTT   TTTTG TA  AAA  AAG                                                           
AA      A        GA   -A   G       TACGAA     TAT     ------A       G    --     TT   TCT     A  --   CC   TCCTTTCTCTTTTTTACAAAACCAGCACTCTTCTCTCTTTTACAAAACTAAAGTGTGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End