Plant MITE

SE0850023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11652
Thellungiella salsuginea
SE0850023
PIF/harbinger
To8
Scaffold_4159:8313-8606
TAA
AGAGCATGAACATTGTTGAAACTC

Secondary structure and sequence

TSD TIR

5'

3'

TA   G              AAA   -AATT G         TAAA  T    AATATTTTTTATTAAAATAGAAAGAATAATGATGAAACATGTGTCAGGAAAAAGGTGAGGAAGGAAAAAATATTTTTTTTCCTCCATATTGAAGAACC
  AGA CATGAACATTGTTG   CTC     G GTCTCTTAA    CT TTTT                                                                                                  
  ||| ||||||||||||||   |||     | |||||||||    || ||||                                                                                                   
  TCT GTACTTGTAACGAC   GAG     C TAGAGAATT    TT TATT                                                                                                  
AA   G              --A   AATGT G         ----  -    TATAATAATAAAATTAGTCACAAAATACATTTTCATCTCTTTGCAGCGAATATAATCTTGCGTATTCTCTGCAAAAATTTTGTACACTACGTATACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0850023

TAAGAGCATGAACATTGTTGAAACTCAATTGGGTCTCTTAATAAACTTTTTTAATATTTTTTATTAAAATAGAAAGAATAATGATGAAACATGTGTCAGGAAAAAGGTGAGGAAGGAAAAAATATTTTTTTTCCTCCATATTGAAGAACCATCATATGCATCACATGTTTTAAAAACGTCTCTTATGCGTTCTAATATAAGCGACGTTTCTCTACTTTTACATAAAACACTGATTAAAATAATAATATTTATTTTTAAGAGATGCTGTAAGAGACAGCAATGTTCATGGTCTAA

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