SE0850025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11654
  • Thellungiella salsuginea
  • SE0850025
  • PIF/harbinger
  • To13
  • Scaffold_10466:51416-51783
  • TTA
  • AGACCATCTCCAAATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             AT   -        -----------   -----------------     TCATGTTAATTTTAAATTAAAAGAAAAAGATTAAATGAGTTAATGGGAGAGAATCGGTTTTCTTGAGAGAACTTTAAGGACCTATGAGAGACCCTGACGTGGCAATATTTAATTGGTTGGAAAATTTGTTTTT
  AGACCATCTCCAA  GTG GTCTTTTA           AGG                 GATTC                                                                                                                                     
  |||||||||||||  ||| ||||||||           |||                 |||||                                                                                                                                     A
  TCTGGTAGAGGTT  CAC CTTTGGAT           AGA                 ACATA                                                                                                                                     
AT             AC   T        ACCTCAATAGT   ATAAAAAATTATAAAAA     ATGAATGTGTATATAGATGTAAACATTTCTCTTAAAATCAAAAATTCGAAGCCATTCAAAAATTTAGTCTCAGAAAGTTTTTTCTTTAAGTCAGTCCTCTCTCTTTATTTTACTCTTCTTTTCTTTATTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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