SE0850029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11658
  • Thellungiella salsuginea
  • SE0850029
  • PIF/harbinger
  • To15
  • Scaffold_3878:6177-6537
  • TAA
  • AGACCATCATTATCGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C             AGAAAC  TTTTGGGTCTTTAAGGTATTTTTTAATTATTGTCTGAGTAAAAAGGTGAATAAGTAATTATGTTTAAAGACTCATGTATTTGGTGTATGTATTGGAGAAATCAAGGTGTCGAAGAGAAAAAAAGAAAATGGGAGAAATGAAAAAGAAAACAAAACA
  AGA CATCATTATCGGT      CC                                                                                                                                                            
  ||| |||||||||||||      ||                                                                                                                                                            A
  TCT GTAGTAATAGCCG      CA                                                                                                                                                            
AA   C             ------  GAAATTTTCGTAGAAATCATTTTTGAATTATAAAATTTTTACTCAATCCTCTCTCTTACTCATTTTTGCAGAAAATTAACTCCTGCAAACATATGCAGAAAATTAACATACACCTTGGGATCCTAATCAATCTTTTTAACCCTTCTCTCTTACCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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