SE0850032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11661
  • Thellungiella salsuginea
  • SE0850032
  • PIF/harbinger
  • To17
  • Scaffold_15658:18611-18801
  • TCA
  • AGAGCATCCGCAACGCGAGTATTTACTCAGGTTTCTAGCAATTTTTTTAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC             C        TTA  CA       -AG             TAAAAAATAC    -    GAAAAAATTTGCT            TTA  G GT
  AGAGCATCCGCAA GCGAGTAT   CT  GGTTTCT   CAATTTTTTTAAT          AAGT GGAA             GGAGACGTTTCT   AT G  
  ||||||||||||| ||||||||   ||  |||||||   |||||||||||||          |||| ||||             ||||||||||||   || |   
  TCTCGTAGGCGTT CGTTTATG   GA  TCAGAGA   GTTAAAAAAATTA          TTCA CCTT             TCTTTGCAGAGG   TG C  
AC             A        TCA  AA       AGG             -----TAATT    T    -------------            ---  G TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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