SE0850035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11664
  • Thellungiella salsuginea
  • SE0850035
  • PIF/harbinger
  • To19
  • Scaffold_10470:1885-2142
  • TTA
  • AGAGCATGTCCATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               AG     G   AAAGAGTTCGGCTCGAGTTCATAAGCAGTTTTGATTAAAAAAAAGAAATAATGCTTATATGGAAAGGATCGGTTCATCAGGACAATCCTGAAGACCTCAGGT
  AGAGCATGTCCATTG  GGATT GAG                                                                                                      
  |||||||||||||||  ||||| |||                                                                                                       
  TCTCGTACAGGTAAC  ACTTG GGG                                                                                                      
AT               -C     -   AGAATTTCTCCAAGTAGTCTATAATTAAAAAAAAAAATTAAGTTTTTAATTTTTTTTTTGAAAGCGGATTACTGTAGAACGGTGGACCTGTTTTAACCTGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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