Plant MITE

SE0830040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11669
Thellungiella salsuginea
SE0830040
hAT
Hat9
Scaffold_6222:49398-49609
GCTATGGT
GCTATGGTCAGTGGCGGAGCTAG

Secondary structure and sequence

TSD TIR

5'

3'

                   CT  AAAAAAAAATTAC        TTTTAG    - -- ATGTACTATGAAGAAATTTTACAGGGGTCATATAAATAAATTATCAATA
GCTATGGTCAGTGGCGGAG  AG             GGGGTCAA      TTTA T  A                                                 
|||||||||||||||||||  ||             ||||||||      |||| |  |                                                  
TGGTATCGGTCACCGCCTC  TC             CCCCAGTT      GTCC C  T                                                 
                   CC  -GTACAATCCTCT        TACTGA    A TT ATGTTTAAAAAAAATATATATGAACATAAAAATATTTTTTTTCTATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0830040

GCTATGGTCAGTGGCGGAGCTAGAAAAAAAAATTACGGGGTCAATTTTAGTTTATAATGTACTATGAAGAAATTTTACAGGGGTCATATAAATAAATTATCAATATTTTATCTTTTTTTTATAAAAATACAAGTATATATAAAAAAAATTTGTATTTCACCTGAGTCATTTGACCCCTCTCCTAACATGCTCCCTCCGCCACTGGCTATGGT

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