SE0810041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11670
  • Thellungiella salsuginea
  • SE0810041
  • Tc1/Mariner
  • St5
  • Scaffold_10860:55-318
  • TA
  • TACTCCCTCTGTTCAGAATTATTTGATGTTTAAGGTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                               ---         GCACACA     A     C    --AA            CTATACTAAAAATATTATTTATAATCCATTTAAA    A   AGCCAATAAGAAGATAATCTGCAGAATATA
TACTCCCTCTGTTCAGAATTATTTGATGTTT   AAGGTTTTT       GTTTA GGATT ATTT    TTTTTATTTTTT                                  TATC TTC                              
|||||||||||||||||||||||||||||||   |||||||||       ||||| ||||| ||||    ||||||||||||                                  |||| |||                               
ATGAGGGAGACAAGTCTTAATAAACTACAAA   TTCCAAAAA       CAAGT CTTAA TAAA    AAAAGTGAAAAG                                  ACGT TTT                              
                               ATC         ----AAA     -     -    CTAC            --------------------------------TT    -   AAATTATTTAAAAATATCAAAAACTGGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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