Plant MITE

SE0810042

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11671
Thellungiella salsuginea
SE0810042
Tc1/Mariner
St6
Scaffold_1978:2033-2299
TA
TCCCTCCGGATTTATT

Secondary structure and sequence

TSD TIR

5'

3'

TAC        -GA      T    -  GTCGTTTTAAGGTTATGCACACAGATTAAGAAAATATTAATTGTATTAGTTTTTCAATATAAAAACATTATTAATTATCTATTTAAACACAATTCAACCAATAATAA
   TCCCTCCG   TTTATT TTAG TT                                                                                                           
   ||||||||   |||||| |||| ||                                                                                                            
   AGGGAGGC   AAATAA TTAA AG                                                                                                           
ATA        AAA      -    C  CAAAATCTCTTTAAAACAAACAAAATTTAATCAACAGCAAAAGTCAAAAGTTACGTTGTAAATAATCCTAAAATAAAAAATTCTAATAAAAATGATACGTTAAACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0810042

TACTCCCTCCGGATTTATTTTTAGTTGTCGTTTTAAGGTTATGCACACAGATTAAGAAAATATTAATTGTATTAGTTTTTCAATATAAAAACATTATTAATTATCTATTTAAACACAATTCAACCAATAATAAAACAAATTGCATAGTAAAAATAATCTTAAAAAATAAAATCCTAATAAATGTTGCATTGAAAACTGAAAACGACAACTAATTTAAAACAAACAAAATTTCTCTAAAACGACAATTAATAAAAAACGGAGGGAATA

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