SE0830044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11673
  • Thellungiella salsuginea
  • SE0830044
  • hAT
  • Hat11
  • Scaffold_10409:4896-5442
  • ATTCAAAC
  • TAGGCCTGAATTTTTTGGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCAAAC                         AACCCGTCCCGTCCCACAGCCATCCCGAATTTCCCGAACTTTTCGGGAAAGGAAATTTATAATTTTCCATTTGGGTTTTGAAAATAATATTTGAATGGATAAGAAAAAGGGTAGGGACGGGAATGAGATTACCCGGACTTCCCATTGGGTAGTTATAAAAAGTGAAATTTTAGAGATTTTGCTTAATTGCAATTTTTTTTAACTAAACAATGATTTTTTTTTCAAATTTATTAACAATTA
        TAGGCCTGAATTTTTTGGGAAGGAT                                                                                                                                                                                                                                                
        |||||||||||||||||||||||||                                                                                                                                                                                                                                                A
        ATCCGGACTTAAAAAGTCCTTAGCC                                                                                                                                                                                                                                                
CAAACTTA                         CTACCTTTAAATGCCCATTTCCTATTCTTACCTTTAAAGCCCTTAGATTTATATGATAGGTTTTATAAGGGTGTTTTATTGTTCTTCCTTTAAATGCCCTTGCCCTTTAAACCCTTTGTTTTGTATGATAGATATGTTAAAATTTCATTTTATATTAGCCTTTTCCTTGTCTTTCCCTGCCTTTTCTCAAGCCTATTAATCCTATTAATCAGATTTTAATTATAAAAAAATTTTTTAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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