SE0850047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11676
  • Thellungiella salsuginea
  • SE0850047
  • PIF/harbinger
  • To21
  • Scaffold_5706:7641-7850
  • TTA
  • TTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                   CCATG           C    CA     -       G GTTGCTAACGAATATTTTGAATTAAAATAATGAAAAGGAAGTCCAAAATATAAAGGC
              TTAGA     TTCATTGAGAG CCTT  CATTT TTTAATT G                                                         
              |||||     ||||||||||| ||||  ||||| ||||||| |                                                         T
              AATCT     AAGTAATTTTC AGGA  ATTCT ATAATAT T                                                         
ATTCCCGTACATGT     -CCTA           A    --     T       - ATAAAAAAATATTCGTTAGAAGATTCCTGGTCGAGATTTTTGAGAAGACGTTCTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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