SE0820049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11678
  • Thellungiella salsuginea
  • SE0820049
  • Mutator
  • M2
  • Scaffold_15617:40413-40871
  • GTTTTATAA
  • TTTATAAAGGGAAAATTTCATATAAAATCCTCAACTTAATTTCAATGAGTNTTTAAAATCATCAACTTTTCCTGTGTCCAGAAAAAACCTTCAAATATTTTTTNTACCCATTTTAAATCTTCAATTGTTATTCGTATAATTAATTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GT        --           A         C                    N   A     A          C               CC              N   CC                          ATA    A     --   ATATACGAAACAATACTAAACGAAAATGGAAACATTATTTGAANCTNGTTGACAAACTAGCTACAGTACTCGTCG
  TTTATAAA  GGGAAAATTTC TATAAAATC TCAACTTAATTTCAATGAGT TTT AAATC TCAACTTTTC TGTGTCCAGAAAAAA  TTCAAATATTTTTT TAC  ATTTTAAATCTTCAATTGTTATTCGT   ATTA TTTAC  AGC                                                                           
  ||||||||  ||||||||||| ||||||||| |||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||  |||||||||||||| |||  ||||||||||||||||||||||||||   |||| |||||  |||                                                                           T
  AAATATTT  CCCTTTTAAGG ATGTTTTAG AGTTGAATTAAAGTTATTCG AAA TTTAG AGTTGAAAAG ACACGGGTTTTTTTT  AAGTTTATAAAAAA ATG  TAAAATTTAGGAGTTAATAATAGGCA   TAGT AAATG  GTT                                                                           
          TG           A         T                    A   A     G          C               TA              G   AA                          CAC    A     AA   ATACTAAACCCCTAAAACGAAGTTAAAACAGCTCTAAATCGAATATAGCTCAAAATACAATTGGTAATAAATTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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