SE0850051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11680
  • Thellungiella salsuginea
  • SE0850051
  • PIF/harbinger
  • To17
  • Scaffold_8620:44547-44737
  • TAA
  • AGAGCATCCGCAATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                AAATACAAT   T       TCC             -----ATTAA             ------------    C  --CATC  T
  AGAGCATCCGCAATGC         CTT GGTCTCT   CAATTTTTTTAAT          AAGTAGGGAAGAA            ACGT TC      GG 
  ||||||||||||||||         ||| |||||||   |||||||||||||          |||||||||||||            |||| ||      || A
  TCTCGTAGGCGTTGCG         GAG TCAGAGA   GTTAAAAAAATTA          TTCATCTTTTCTT            TGCA AG      CC 
AA                CTCATAAAT   T       -TC             ATTTTTTATG             TTAAACAACCTT    A  AAATTA  A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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