SE0830053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11682
  • Thellungiella salsuginea
  • SE0830053
  • hAT
  • Hat6
  • Scaffold_3919:147023-147191
  • AGAGGGAG
  • CAGGGCCGGATCTGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AGAGGGAG     C        -   ACAGCCT   -      ------TCC  CTACAGCCCCGAAAATTTTTCTTTAGTTATTTAC
        CAGGG CGGATCTG GAG       GAT GAAACA         GC                                  
        ||||| |||||||| |||       ||| ||||||         ||                                  G
        GTTCC GCCTAGAC CTT       CTA CTTTGT         GT                                  
GAGGGAGA     A        T   AAACTCC   T      TAAATTCTT  TTATAAAAAAAACACTAAATCCCCGACTTTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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