SE0830054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11683
  • Thellungiella salsuginea
  • SE0830054
  • hAT
  • Hat14
  • Scaffold_11342:41963-42661
  • ATGGTATC
  • GGTATCCAGAGCTGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
AT      --   A C     ---    CATGTAGTGAAAAAGGCTTTCGCCTCAAGCCCCCAATGTTAATTTTTCAGGGTCCCCATTTTCTTAAGAGGTGGTTAAGTGGTTTATGGTTGGCATGAGGTCCTTTTTACATAATATGTTTTCTTATTTTTGTTTATAAGAGAGAGAAAAAGGAATAGATATAGGAAATAGATTAAGATTCCCTTCTCCCAATAGTTTTAGGAAATTGATTAAGATTTGTTTAGATTCCCCGCCTTATAACATCCTAAAATAAGAGCAAAACCCTATAGCCCAAGAAAAAAAAAATTCATAGACTGCTTATCAGATATTGCTGACGATTCCAGTT
  GGTATC  CAG G TGTGC   TTAC                                                                                                                                                                                                                                                                                                                                     
  ||||||  ||| | |||||   ||||                                                                                                                                                                                                                                                                                                                                      
  CTATGG  GTC C GCACG   CCAA                                                                                                                                                                                                                                                                                                                                     
        TA   A A     CTT    ATATCCCTGAATTCCGTTTGATTTTATTATTCCGGAAAAAGTAAATTTTTTTTACAAAAGATTGTTTTTTATATTATATTAAAATTTTAGTATATTTTATAAGTTTTTATTTTAAAATTAGATTTTTTTGATTAATTCTGTATTACAAAGAAGAAAGAAAAAGTTATTTGAAAAAGTGGTTTGAGAGTATTAGCTCCAGGAATTGATCGAAAGAAAGATATCTATACTATCTATCCGGTAGGTTAGAAAGAACACTGTATCAACTAGCGTTGATTCTGAAATAGTTGAAGTTGAAACTTTTGGAAGAAAGTCGGTTCCGTTGACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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