SE0830056

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11685
  • Thellungiella salsuginea
  • SE0830056
  • hAT
  • Hat16
  • Scaffold_2628:35070-35507
  • CTTCACAT
  • CAGGGCCGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCACAT              TGTATACAAATTAGAAACTTTGGCTTACGGACCATTTTTTAAAAATAAAATTATACATAAATTTTTGTTATTATAGTATTATTATGGTCAAATAAATAATCATAATGTTTTCAGAGGTTTTAAAAAACTAGAAATTATTATTAAAAATGAAAATATTGTAAAAATAAGGTAAATAATCCGTTGATCTTATTCGCACA
        CAGGGCCGTGCTTA                                                                                                                                                                                                     
        ||||||||||||||                                                                                                                                                                                                      
        GTCTCGGCACGGGT                                                                                                                                                                                                     
TACACTTC              CTCAATACCTCTGGGATTCGCCATATGTCTTTTTAATAAAAACGATTTTATTATTGATAGCAATAAGGTTGAACTATATCGTAATGTGATTTTTAAATTACATTCAAAACCCGATTTTTTATTTAATCACGTTTAAATTACAAAATAACAGTTTTTTTCAAATTGCATAATTACCATTTTACTGACATTCATACTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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