SE0830057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11686
  • Thellungiella salsuginea
  • SE0830057
  • hAT
  • Hat17
  • Scaffold_14958:20529-20925
  • CTTCTAGT
  • CTAGTCAGTGTTCAAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTT    --T        A    -A     AGGCGTTAGGCGGGCGGTGATAAAACGCCTAGTGCCTAGAACGCCTAGTCGGAGTCTAGGCTATTTTTAGGCGTTTTAGACGTTTACAAATAAATAAATTTATTATATATTTATAGAGTGCAATATATTAAATTACATGATTTTTTTATAAATAATAAAGTTTACATATTA
   CTAG   CAGTGTTC AGAA  GCGCT                                                                                                                                                                           
   ||||   |||||||| ||||  |||||                                                                                                                                                                            
   GATC   GTCACAAG TTTT  GCCAG                                                                                                                                                                           
  C    TTC        A    CA     ATCCGCTGGCAGATCCGTGACGGATCCGCGATCCGTAACTGTCTGTCGGGCGGATCCATAATCCGCAAGTATCTGGCACTACCAATGAAGAATTTGCAAAATATATACTATAAATATTTTTTTTTACAAAAAATACACATTAAATTTAAAACTTATATATAAATTCTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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