Plant MITE

SE0850060

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11689
Thellungiella salsuginea
SE0850060
PIF/harbinger
To23
Scaffold_1753:24428-24740
TAA
AGGCTCTGATT

Secondary structure and sequence

TSD TIR

5'

3'

TA   C       ------------G   -   AAACTTTTAAAACTGTAGAAACTTTAAAGAAAATTAAAAGTCTTAAAAGTCACTAATTAACTAATCAGATTTTATTGATTTAACAGTTTTTAAAGTCAAAACACTGTTTTTAAATTTTCTCACAGCTTTC
  AGG TCTGATT             GTA AAT                                                                                                                                  
  ||| |||||||             ||| |||                                                                                                                                   
  TCC AGACTAA             CGA ATC                                                                                                                                  
AA   C       AGCTTCCTTACAC   C   TAAAATTAAAAATTGATATTGACATTTATTAAAACCGACATTTTATTATCTACACCGAAATCTTTTTTTTATTTTCGGTGTACAAATATGAAAATTTTGAATTCACACCTAATGGACTTTTTATCTTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0850060

TAAGGCTCTGATTGGTAAATAAACTTTTAAAACTGTAGAAACTTTAAAGAAAATTAAAAGTCTTAAAAGTCACTAATTAACTAATCAGATTTTATTGATTTAACAGTTTTTAAAGTCAAAACACTGTTTTTAAATTTTCTCACAGCTTTCTCTTTCTATTTTTCAGGTAATCCACACTTAAGTTTTAAAAGTATAAACATGTGGCTTTTATTTTTTTTCTAAAGCCACATCTATTATTTTACAGCCAAAATTATTTACAGTTATAGTTAAAAATTAAAATCTACAGCCACATTCCTTCGAAATCAGACCCTAA

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