SE0850070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11699
  • Thellungiella salsuginea
  • SE0850070
  • PIF/harbinger
  • To5
  • Scaffold_8366:32151-32570
  • TCA
  • AGGGGGTGTTATTCAATCATGAATTTAAAATGAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TC                     -AA     AAT      ---  TATG ---    T     TCTAGATTTAAAAATTGATATCAGTTTGATGGATTCATTTGTTTAGATTCTAAAATCTCTGCAATATACACTGGATTTTGATTCTAATAATTTACTCATAAAACTCTATTAGAATTGATTTGAAATGACTTAATGTACAAAGATTTTAAAAAT
  AGGGGGTGTTATTCAATCATG   TTTAA   GAATTT   TC    T   TTTA AATCT                                                                                                                                                         
  |||||||||||||||||||||   |||||   ||||||   ||    |   |||| |||||                                                                                                                                                         T
  TCCCCCACAATAAGTTAGTAC   AAATT   CTTAAA   AG    G   GTGT TAGGT                                                                                                                                                         
AC                     CAA     -AT      TTT  ---- TTG    -     GATAATAAGTTGATTACTAAGATTTATTACAAAATTTTAGTTCACAATAATCAAAAAAATAACATTTAATATAAATTCTCCAAAATTTCAAACCACAATAAGTAATTTCTAAAGTTTAGAAAGTAATTTTAGGTCACAATAAGTTTTGATTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End