Plant MITE

SE1220001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11724
Citrullus lanatus
SE1220001
Mutator
M1
scaffold95:5240383-5240609
TTTTAAAAA
AAAAGGG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTA       CTCTTTTCAAATATA      AG AACA       G     -ATAC        T    -T         A        C    G        CTA    ACG
     AAAAGGG               GCAAAA  G    AAAATAT TACAA     AGCAAAAT TCAC  TCTATCTGC ATAGATTG GATA ACTATTAT   TGTC   
     |||||||               ||||||  |    ||||||| |||||     |||||||| ||||  ||||||||| |||||||| |||| ||||||||   ||||    
     TTTTCTC               CGTTTT  C    TTTTATA ATGTT     TCGTTTTA AGTG  AGATAGACG TATCTGGC CTAT TGATGATA   ACAG   
AAAAA       TTTAATAAAATCTAC      GA -AAC       A     GACTA        T    TC         C        A    A        AAC    ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220001

TTTTAAAAAGGGCTCTTTTCAAATATAGCAAAAAGGAACAAAAATATGTACAAATACAGCAAAATTTCACTTCTATCTGCAATAGATTGCGATAGACTATTATCTATGTCACGATAGACACAAATAGTAGTATATCACGGTCTATCGCAGATAGACTGTGATATTTTGCTATCAGTTGTAAATATTTTCAACAGTTTTGCCATCTAAAATAATTTCTCTTTTAAAAA

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