SE1220005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11728
  • Citrullus lanatus
  • SE1220005
  • Mutator
  • M2
  • scaffold1:455327-455568
  • TTATAAATT
  • TTATAAATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
         AT   AAAG  A   TAA    AA     --A                     A                            C C    AAA       A       A   AA  TC
   TTATAA  TGG    TT TTA   ATAG  AAAAT   TCAAATTATTTACAAATATAA AGGATTTCATTGTCTATCAGCAATAAAC G GATA   TTCTATC TTTGAGT ATA  AG  
   ||||||  |||    || |||   ||||  |||||   ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||   ||||||| ||||||| |||  ||  T
   AATATT  ACC    AA AGT   TATC  TTTTA   GGTTTGATAAATGTTTATATT TTTTAAAGTGATAGATAGTTGTTATTTG C CTAT   AAGATAG GAACTCG TAT  TC  
TTA      --   -AAA  A   TTA    -G     CTA                     C                            A -    CTG       C       C   -C  TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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