SE1220007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11730
  • Citrullus lanatus
  • SE1220007
  • Mutator
  • M1
  • scaffold56:2851433-2851651
  • TATATTAAA
  • AGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTAA   AAAA  A  TT A         C  C GA            CTA          -A  C       -------AA   G A                   TAT
        AGG    TT TC  A ATAGCAAAA TA T  AAATATTTACAA   ATAGCAAAAT  CA CGTCTAT         ATT C ATAGACTACTGTCTGTGTC   
        |||    || ||  | ||||||||| || |  ||||||||||||   ||||||||||  || |||||||         ||| | |||||||||||||||||||    
        TCC    AA AG  T TATTGTTTT AT A  TTTATAAATGTT   TATCGTTTTA  GT GCAGATA         TGG G TATCTGATGATAGACACAG   
AAATTATA   CGAG  A  TT A         T  T AG            -TA          AA  A       AACACTATC   G C                   TGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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