SE1250008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11731
  • Citrullus lanatus
  • SE1250008
  • PIF/harbinger
  • To2
  • scaffold106:2096848-2097430
  • TAA
  • AGAACTTGTTTGGTAG

Secondary structure and sequence

TSD    TIR
5'



3'
TA  AA            --A         -T    GTTTATGTTTTTA ATTCATTAAGTTTAGCGAATTTGCGTTTGGTAAGCCGTTTGAATTTTGTTATCGAAAACTGATTTTAGATTATGTGATCCAAACAGTACAAATTCTGAAAGACAACATTTTTATATTTTTAGTGAATTTAGATTTTGAGTTTAAAATTTTAAGATGCAAAATTATGTAAAAAAAGAATAAAAACATTAACAAATATAGAATTTCATGCTATAAACTCATTTACTTTTTAAATTAAATTATATATTATAT
  AG  CTTGTTTGGTAG   AAACTCAAA  TCTG             G                                                                                                                                                                                                                                                         
  ||  ||||||||||||   |||||||||  ||||             |                                                                                                                                                                                                                                                         A
  TC  GAACAAACCATC   TAGACTTTT  CTTA             A                                                                                                                                                                                                                                                         
AA  CC            CTT         AT    ------------- AATTTTTGCTCCTTAAGTTATTTTTGTTTCAACATAAAGTACAAAAGTCTATGCACAAACCATCGTCTAAGTCTTTACTTTAAGGTTAAGTTTGTTAATAAATTTTACACACACTATTATATAAATATTAGATATTTGAGTGATTTATAATCCAACTTATTTTTGATAATAATTAGGTAAATATTTGAACCATATACGATTTTTAAATATAATGATAATAAAAGATTATAGTATATTAAATATGAGGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End