SE1220011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11734
  • Citrullus lanatus
  • SE1220011
  • Mutator
  • M1
  • scaffold1143:34830-35005
  • ATTTATATT
  • TATATTGGGCTTTTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATT    -T    CTT  T  AAAT  A       GAACT                -         TTTAC       -      CT  CA
   TATA  TGGG   TT TC    AT GCAAAAT     AAAATATTTACAATTA TAGTAAAAT     TGTCTAT TGCGAT  AT  
   ||||  ||||   || ||    || |||||||     |||||||||||||||| |||||||||     ||||||| ||||||  ||   
   ATAT  ACCT   AA AG    TA CGTTTTG     TTTTATAAATGTTGAT ATCGTTTTA     GCAGATA ACGCTA  TG  
  T    TT    TTT  T  AATT  C       ACAAC                T         -TGTA       G      TC  GC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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