SE1220012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11735
  • Citrullus lanatus
  • SE1220012
  • Mutator
  • M3
  • scaffold31:627210-627450
  • TAAAATCTT
  • GAATTGTTTCCAAATATAGAAAAATGAACCAAAATATTTACTTATATAGTAAAATTTTAC

Secondary structure and sequence

TSD    TIR
5'



3'
   TAAAATCTT         CC    -      AAA  AA  -           TT   -         TTT  TGTCTATT  C        ----------              CT     CTAC    GTC
            GAATTGTTT  AAAT ATAGAA   TG  CC AAAATATTTAC  ATA TAGTAAAAT   AC        TG GATAGACC          GTGATAGACTATTA  TGTGT    TTGT   
            |||||||||  |||| ||||||   ||  || |||||||||||  ||| |||||||||   ||        || ||||||||          ||||||||||||||  |||||    ||||    
            TTTAATAAA  TTTA TGTTTT   AC  GG TTTTATAAATG  TAT ATTGTTTTA   TG        AC CTATCTGG          CACTATCTGATGAT  ACACA    AATA   
TTCTAAAATCCT         -A    C      --G  --  C           TT   T         TAT  ------TT  A        TGTTATCTAA              AT     ----    GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End