SE1220018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11741
  • Citrullus lanatus
  • SE1220018
  • Mutator
  • M1
  • scaffold22:1919378-1919534
  • TAATTATTA
  • TAATTATTAGGAAAATTATCTTAAATGGCAAAACTACTAAAAATATTTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
    T       AAA  A  T  A         -CT       A        ACTA          -A   A       A
TAAT ATTAGGA   TT TC TA ATGGCAAAA   ACTAAAA TATTTACA    ATAGCAAAAT  CAT GTCTATC 
|||| |||||||   || || || |||||||||   ||||||| ||||||||    ||||||||||  ||| ||||||| T
ATTA TAATCCT   AA AG GT TATCGTTTT   TGGTTTT ATAAATGT    TATCGTTTTA  GTG CAGATAG 
    T       GAG  A  T  A         CCT       -        -GTA          AA   A       A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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