Plant MITE

SE1220021

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11744
Citrullus lanatus
SE1220021
Mutator
M1
scaffold25:2360037-2360202
ATTAATTAA
TTAATTAAGG

Secondary structure and sequence

TSD TIR

5'

3'

A        -  AAAA  A  TT A         -CT   G             CTA          A   --       GCAATT
 TTAATTAA GG    TT TC  A ATGGCAAAA   GCT AAAATATTTACAA   ATAGCAAAAT TTA  GTCTATC      
 |||||||| ||    || ||  | |||||||||   ||| |||||||||||||   |||||||||| |||  |||||||      T
 AATTAATT CC    AA AG  T TATCGTTTT   TGG TTTTATGAATGTT   TATCGTTTTA AGT  CAGATAG      
         A  CGAG  A  TT A         CCT   -             -TA          A   GA       ACACTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220021

ATTAATTAAGGAAAATTATCTTAAATGGCAAAACTGCTGAAAATATTTACAACTAATAGCAAAATATTAGTCTATCGCAATTTGTCACAGATAGACAGTGAAATTTTGCTATATTTGTAAGTATTTTGGTTCCTTTTGCTATATTTGAAAAGAGCCCATTAATTAA

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