SE1220023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11746
  • Citrullus lanatus
  • SE1220023
  • Mutator
  • M5
  • scaffold347:313599-313956
  • TAAAGAAAA
  • AGGATAAATTGCAAAAACTACCCTTAAAGTATGGTAGTAATTGTAATTAGACCCTTAAATTACTTTCAATTTTAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
 TAAAGAAA   A             C  -    TA         A   A         GAC      ATT          T     TTTAAACTCCCAAAATTAT      - TT      --   TCAAATTAGACATTCGAACTTATTTAATTGTACAAATTGTAACATCTGTATAAGTTTAAGAGTTC
         AGG TAAATTGCAAAAA TA CCCT  AAGTATGGT GTA TTGTAATTA   CCTTAA   ACTTTCAATT TAAAA                   ATAAAT G  GAAATT  GAG                                                                 
         ||| ||||||||||||| || ||||  ||||||||| ||| |||||||||   ||||||   |||||||||| |||||                   |||||| |  ||||||  |||                                                                 A
         TCC GTTTAACGTTTTT GT GGGA  TTCATACTA CAT AACGTTAAT   GGAGTT   TGAAAGTTAA ATTTT                   CCCGGG A  TTTGAA  TCT                                                                 
AAAAAGAAA   C             A  A    -C         C   C         ATT      ---          C     ----------------TAA      G --      AA   TCACAATTTTAATCTAGGAGTTCGAATGTTATTAAAATCTTTAACCTGGGTGTTTACTATTTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End