SE1220026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11749
  • Citrullus lanatus
  • SE1220026
  • Mutator
  • M2
  • scaffold83:2721230-2721456
  • TTAATTTAA
  • TAATTTAAGGATTGTTTTCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T      ---        C    ATAAC     GA  -C     A                 T     -G C      C       CT  ---TAT         A      - TA
 TAA TTAAGG   ATTGTTTT AAAT     AAAAT  GC  AAAAT TTTACAAATATAACAAA TGTCA  G CTATCA TGATAGA  AC      CATCTATTA TGTCTA C  
 ||| ||||||   |||||||| ||||     |||||  ||  ||||| ||||||||||||||||| |||||  | |||||| |||||||  ||      ||||||||| |||||| |   
 ATT AATTCC   TAATAAAA TTTA     TTTTA  CG  TTTTA AAATGTTTATATTGTTT ACAGT  C GATAGT ACTATCT  TG      GTAGATAAT ACAGAT G  
A   T      CCT        -    --CTA     -A  AT     A                 T     GA A      C       AT  TTATTT         C      A TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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