Plant MITE

SE1230027

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11750
Citrullus lanatus
SE1230027
hAT
Hat1
scaffold32:850134-850506
TTATAAGC
TTATAAGCAAGGTTCAAAATGTC

Secondary structure and sequence

TSD TIR

5'

3'

          A   TCA    -G  --  - G    TAAAAATCTCGAGATCTTAATTTTATAAAAAGTTCAATAGAAATATCAATAAAATGTCAATTTCTATAAATATTTCTAGAAAAATTATAAAAAAAATAATATTAAAAAGATTAAATTATTAAATAAACATTTTATGATTTTCAACAAGTTAAC
 TTATAAGCA GGT   AAAT  TC  GA T TTGA                                                                                                                                                         
 ||||||||| |||   ||||  ||  || | ||||                                                                                                                                                         A
 AATATTCGT TCA   TTTA  AG  GC G TACA                                                                                                                                                         
G         A   TAA    AA  CA  T -    GTTACAAAGGTAGTTGTAAAGGTGCAAATGTACTCAAACTGTAGCTGTACTGCCCACTTAGTTAAAAAAGCAATATAGTATCTTTCTAGTTGTTTTGTAATTTTTTTTTTGTTATTTTACGGTGATTACATTCATATTATATTTATTATCTGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1230027

TTATAAGCAAGGTTCAAAATGTCGATGTTGATAAAAATCTCGAGATCTTAATTTTATAAAAAGTTCAATAGAAATATCAATAAAATGTCAATTTCTATAAATATTTCTAGAAAAATTATAAAAAAAATAATATTAAAAAGATTAAATTATTAAATAAACATTTTATGATTTTCAACAAGTTAACACGTCTATTATTTATATTATACTTACATTAGTGGCATTTTATTGTTTTTTTTTTAATGTTTTGTTGATCTTTCTATGATATAACGAAAAAATTGATTCACCCGTCATGTCGATGTCAAACTCATGTAAACGTGGAAATGTTGATGGAAACATTGACATGTCGACGAAAATTTAATACTATGCTTATAAG

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