SE1220028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11751
  • Citrullus lanatus
  • SE1220028
  • Mutator
  • M7
  • scaffold95:4314142-4314658
  • TTATTATTA
  • AGGTTAAACATGACTTCTAGTCTTTAAGCTTTCGTAAAAGTAACAATTTAGTCCCTGAATTTTGATTTGTAACGATTTAGTCCCTATACTTTCAATTTTGTAACAATTTAGTCCCTAGACTTTACTATATAACAATTTAGTCTTTATACTTTAAAACTTGTAACGATTTAGTCTCTATTGTAGAAATTAGTGTTAAAATTTAATAAGATTTCTTGTATTTTAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTATT        C TG    CTA  C    A        AA            A    C         A      AC         C         C                       A      -AC   A         A      A      A   CT   -                T        TT   -         T   -AA     ---------------------CT       --     CAATAAACTAATT
        AGGTTAAA A  ACTT   GT TTTA GCTTTCGT  AAGTAACAATTT GTCC TGAATTTTG TTTGTA  GATTTAGTC CTATACTTT AATTTTGTAACAATTTAGTCCCT GACTTT   TAT TAACAATTT GTCTTT TACTTT AAA  TGT AACGATTTAGTCTCTA TGTAGAAA  AGT GTTAAAATT AAT   GATTT                       TGTATTT  TAAAC             
        |||||||| |  ||||   || |||| ||||||||  |||||||||||| |||| ||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||||||||||| ||||||   ||| ||||||||| |||||| |||||| |||  ||| |||||||||||||||| ||||||||  ||| ||||||||| |||   |||||                       |||||||  |||||              
        TCCAATTT T  TGAA   CA AGAT TGAAAGTA  TTCATTGTTAAA CAGG ATTTAAAAT AAATAT  CTAAATCAG GATATGAAA TTAAAACATTGTTAAATCAGGGA CTGGAA   ATA ATTGTTGAA TAGGAA ATGAAA TTT  ACA TTGTTAAATCAGGGAT ACATTTTT  TTA TAGTTTTAA TTA   TTAAA                       ACATAAA  ATTTG             
ATTATTAT        T TA    AAC  A    A        CC            C    A         C      AC         A         A                       -      ATC   C         C      C      G   -T   A                T        TT   G         T   CAG     AATAATAAAATACTACATTTACT       AC     TATAACTCAGAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End