SE1230029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11752
  • Citrullus lanatus
  • SE1230029
  • hAT
  • Hat2
  • scaffold22:2717535-2717877
  • ATTTTAAA
  • TTTAAACAAGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AT      --       GAAAAT      C         ATATATTCGTAAATTGAAGGGTTCAATATCGATATTAAATATCCATGGATTCCCAACACCTTTTTATTAATACTTGTAAAACATAAAAAAAAAATATAATCTATTTAGTTCAATATGAACATGAATACTAATAACAAT
  TTTAAA  CAAGGAT      ATCCAT GATATGTCG                                                                                                                                          
  ||||||  |||||||      |||||| |||||||||                                                                                                                                           
  AAATTT  GTTCCTA      ATTTTA TAGTTATAG                                                                                                                                          
        TA       ------      -         TTATACCTATAGCTGTAAAATTAAAATGCCTATATAACTGTTTTATAGCTACAGTTACTTATAAAGATATTTAGTGTTTAAAATATTATAAATAAATCTAATTATTAATTCAACAAAAATAGTTTGATTTAATACCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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