Plant MITE

SE1220030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11753
Citrullus lanatus
SE1220030
Mutator
M3
scaffold108:3707742-3707941
TATAATATA
TATAATATAGGGTAATTGTTTTAAATGACAAAACTGCTAAAAATATTTTCAAATATAACAAAATGTCATTG

Secondary structure and sequence

TSD TIR

5'

3'

    A        AAT     -     ---  C   ACT       A     TC       A        C    TCTATTTAT             ---AA      TA
TATA TATAGGGT   TGTTT TAAAT   GA AAA   GCTAAAA TATTT  AAATATA CAAAATGT ATTG         GTAGACAGTGATA     TGATAG  
|||| ||||||||   ||||| |||||   || |||   ||||||| |||||  ||||||| |||||||| ||||         |||||||||||||     ||||||   
ATAT ATATCCCG   ACAAA GTTTA   CT TTT   TGGTTTT ATAAA  TTTATAT GTTTTATA TGAC         TATCTGTCACTAT     ACTATC  
    A        ---     A     TAT  T   ACT       -     TA       C        T    ---------             CTGTG      TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220030

TATAATATAGGGTAATTGTTTTAAATGACAAAACTGCTAAAAATATTTTCAAATATAACAAAATGTCATTGTCTATTTATGTAGACAGTGATAAATGATAGTAGTCTATCAGTGTCTATCACTGTCTATCAGTTATATTTTGCTATATTTATAAATATTTTGGTTCATTTTTCTATATTTGAAAACAGCCCTATAATATA

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