Plant MITE

SE1220034

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11757
Citrullus lanatus
SE1220034
Mutator
M6
scaffold619:11257-11511
TAAAATTAA
TGGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

TAAAATTAA    -----   --A        ---------------------  AGTAATCATATTCAAAGTATTTGCAAATATAACACAATGCAAAAAAAATTTATAAATATAGCAAAATTTAGATTTTGTTTTTAAAGT
         TGGG     GCA   TTGCAAAT                     AC                                                                                       
         ||||     |||   ||||||||                     ||                                                                                        
         ATCC     CGT   ATATTGTG                     TA                                                                                       
 TAATTAAA    ATTAA   AAC        AAAATTCCTATTATTAATTCA  TATCATTATAAATTTTTTTTTAATATTTATCGTTTTAGATAGTTACTATTCGAGATGGGGCGATAATTATACTAGATAGTGATTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220034

TAAAATTAATGGGGCAATTGCAAATACAGTAATCATATTCAAAGTATTTGCAAATATAACACAATGCAAAAAAAATTTATAAATATAGCAAAATTTAGATTTTGTTTTTAAAGTATATTAGTGATAGATCATATTAATAGCGGGGTAGAGCTTATCATTGATAGATTTTGCTATTTATAATTTTTTTTTAAATATTACTATATACTTAATTATTATCCTTAAAAGTGTTATACAATGCAATTACCTAAAATTAAT

Copy Cancel