SE1220035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11758
  • Citrullus lanatus
  • SE1220035
  • Mutator
  • M8
  • scaffold121:1305248-1305855
  • TAAATATTA
  • AATATTAGATTTAAATTTTATTTTGATCCTTGAACTTTGAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -  A                A                -A      TAT     TCT     CTTT  -  AATATCTGTTTTAGTATCTGAACTTTGAATATTGTTTTATTTTGGTCCCTAAACTTTTAAAAATGTTCGTTTTATTCCCTAAACTTTAAAAAAATGCTTATTTTGGTCTTGCTATATTAAGATTTTGTTAACTCTTTAACAAAATGGCGAGGTGACTTATGTTTTTGGATGAATAGCTACCAAATAAAGTTAGCAACCCAAAAAAATCTAGAGTATTATTTTGAAAAGGTGAC
  AATATT AG TTTAAATTTTATTTTG TCCTTGAACTTTGAGT  ATGTTC   TTTGG   CTAAA    TA GA                                                                                                                                                                                                                                         
  |||||| || |||||||||||||||| ||||||||||||||||  ||||||   |||||   |||||    || ||                                                                                                                                                                                                                                          
  TTATAA TC AAATTTAGGATAAAAT AGGAATTTGAAACTCA  ACAAAA   TAAAA   TCAGG    GA TT                                                                                                                                                                                                                                         
 A      A  C                C                GA      ---     ---     ----  A  GAAATTTTTTGCAAGGAAAATCAGGGATTTAAAAATTTTTCACAAATAAATCAGGGATGAATTTTAATACAATTGAGAAGTTGTATTTATCCTCCCTCAAACATAAAAACCTACTGTTCCGAGATCTACATAATTCGTTCTACTTCCACTTCATTTTACGGTTGTTAGTTGTGCAGTTTTATAACTTACTGGTTTTAAAACTTGTTTTTTACAGAAAATTTCAGACGGCGAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End