SE1220036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11759
  • Citrullus lanatus
  • SE1220036
  • Mutator
  • M3
  • scaffold300:358582-358742
  • TTAAAAAAG
  • AAGAGTTGTTTTTAAATATACAAAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
  TTAAAA            T    AT      A  AACC           -  AT         TTTCAC      AA     TG
        AAGAGTTGTTTT AAAT  ACAAAA TG    AAAATATTTAC CA  ATAGTAAAA      TATTGC  TCTAT  
        |||||||||||| ||||  |||||| ||    ||||||||||| ||  |||||||||      ||||||  |||||  T
        TTCTTAATAAAA TTTA  TGTTTT AC    TTTTATAAATG GT  TGTCGTTTT      ATAACG  AGATA  
AAAAAAAA            -    -C      G  -GAA           T  AT         ------      CC     TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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