SE1250038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11761
  • Citrullus lanatus
  • SE1250038
  • PIF/harbinger
  • To4
  • scaffold109:1082030-1082326
  • TAT
  • GGCTCCGTTTGGTAATCATTTGGTTTTTTATTTTTGTTTTTAAAAATTAAGTCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAT   T                 G      TA      -     A              AGACA      CCACCTCTAAATTACTTTTGACC     TTTAGAAAATCAAGCCAAATTTTGAAAACTTAAAAAAGTAGGCTTTTAAAAACTTGTTTTTGT
    GGC CCGTTTGGTAATCATTT GTTTTT  TTTTTG TTTTT AAAATTAAGTCTAT     TTGTTT                       AATGG                                                               
    ||| ||||||||||||||||| ||||||  |||||| ||||| ||||||||||||||     ||||||                       |||||                                                               T
    CCG GGTAAATCATTGGTAAA CAAAAG  AAAAAC AAAAA TTTTAATTCGGATA     AATAAG                       AGTAA                                                               
TATC   -                 A      CC      C     C              -----      ----------------------A     AGAATATTACTAAACGTATCAAGAATTTCATGTTTTACCAACTTAAGTATTGGTTTAAGGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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