SE1220039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11762
  • Citrullus lanatus
  • SE1220039
  • Mutator
  • M1
  • scaffold527:83194-83385
  • TATAATATA
  • TATAATATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
    A     AAAAATTA  TTAAATGACAAAACTGCTGAAAATATTTACAATTAGTAGCAAAATATACAGTCTATATGTGATAAACCGTGATAAATCGC
TATA TATAG        TC                                                                                
|||| |||||        ||                                                                                 
ATAT ATATC        CC                                                                                
    A     --------  GAGAAAAGTTTATATCGTTTTCCTTGGTTTTATAAATGTTTATATCGTTTTAAAGTAGCACTGTGTCTATTATCAGATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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