SE1250042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11765
  • Citrullus lanatus
  • SE1250042
  • PIF/harbinger
  • To7
  • scaffold28:4962579-4962820
  • TTA
  • AGTGCATGTTTGGGAGTAGTTTTAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  T              A          CATC     C     TGTTT          AA       TGAA       --      -  AC             A TTTTCAATTTTACACTTT
  AG GCATGTTTGGGAGT GTTTTAAAAT    AAAAT ACTTT     TGTCATTTTT  AATCACT    AAAACAT  TTTTAA CC  TCAAAATTAATTT G                  
  || |||||||||||||| ||||||||||    ||||| |||||     ||||||||||  |||||||    |||||||  |||||| ||  ||||||||||||| |                  T
  TC CGTACAAATCCTCA TAAAATTTTA    TTTTA TGAAA     ACAGTAAAAA  TTAGTGG    TTTTGTA  AAAATT GG  AGTTTTGATTAAA C                  
AT  T              C          CCGA     A     -----          AA       --CA       CA      A  -A             A TACTATACTTTCGACTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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