Plant MITE

SE1250044

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11767
Citrullus lanatus
SE1250044
PIF/harbinger
To8
scaffold200:340735-340994
TAA
AGGGGATGTTTGGGGAGCT

Secondary structure and sequence

TSD TIR

5'

3'

TA     A             TGAAT          ------------TACTAG  A      -    A  G    GCA     -AC   A  AATAAACGAAAATAAG    CAAACCATGGAAACGATGGAAAATAGGATT
  AGGGG TGTTTGGGGAGCT     GTAATAGGAT                  GA TCAGAA GAGT TT GAAT   TGAGC   TTG GG                ATGG                              
  ||||| |||||||||||||     ||||||||||                  || |||||| |||| || ||||   |||||   ||| ||                ||||                               
  TCCCC ACAAACCTTTTGG     CATTATCTTA                  TT GGTTTT CTTA AA CTTA   ACTCG   AAC CC                TGTT                              
AA     C             -----          TTCAAACATTACACTACA  A      A    C  A    ---     CAA   -  ---AGGTTAAACATTA    TTCAGTAAGGCAAGGCTGTCAAAAGTTAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250044

TAAGGGGATGTTTGGGGAGCTTGAATGTAATAGGATTACTAGGAATCAGAAGAGTATTGGAATGCATGAGCACTTGAGGAATAAACGAAAATAAGATGGCAAACCATGGAAACGATGGAAAATAGGATTGGATTGAAAACTGTCGGAACGGAATGACTTTTGTATTACAAATTGGACCCAAAACGCTCAATTCAAACATTCATTTTGGATTACATCACATTACAAACTTATTCTATTACGGTTTTCCAAACACCCCCTAA

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