SE1250046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11769
  • Citrullus lanatus
  • SE1250046
  • PIF/harbinger
  • To9
  • scaffold148:1559037-1559274
  • TTA
  • AGGGGGTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             CC    -  CTACATAAATTGGTGTTAAACAACTCAACTTCAATAGTAAATACTATTAAAGTTTGCACATTTATCGAGGAACTTCATCTTCTCCTCTTTCTCTGT
  AGGGGGTGTTTGG  CACC AA                                                                                                
  |||||||||||||  |||| ||                                                                                                 
  TCCCCCACAAATC  CGTG CT                                                                                                
AT             -C    A  GAACTCAATACTTCAGATCTCAATTATACAACTTCAATCTTTCAGATATAAACCCCACGTTTCAACACTCTACCTCAAGGAACTATTTCCAAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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